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SRX9090690: GSM4771923: S_1; Staphylococcus aureus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 4.4M spots, 1.3G bases, 408.6Mb downloads

Submitted by: NCBI (GEO)
Study: Integration of Metabolomics and Transcriptomics Reveals Changes in MRSA Exposed to Terpinen-4-ol
show Abstracthide Abstract
Staphylococcus aureus (S. aureus) is a gram-positive bacterium that causes a wide range of diseases. Terpinen-4-ol is a monoterpene component contained in most plant essential oils with good antibacterial activity. In this study, terpinen-4-ol effectively inhibited 13 strains of S. aureus, and effectively inhibited the biofilm of MRSA. Metabolomics and transcriptomics were used to elucidate changes in MRSA cells exposed to terpinen-4-ol. Terpinen-4-ol significantly changed (greater than a 2- or less than a 2-fold change) the expression of 304 genes and the level of 847 metabolites (greater than a 1.5- or less than a 0.67-fold change) in MRSA. The levels of genes and metabolites related to the valine, leucine and isoleucine biosynthesis metabolism pathway, the purine and pyrimidine metabolism pathway, energy metabolism and ß-lactam resistance were dramatically changed in biofilms exposed to terpinen-4-ol. To the best of our knowledge, this research is the first to report the metabolite and expression profiles of MRSA exposed to terpinen-4-ol. Overall design: Use 0.08% terpinen-4-ol to treat MRSA ATCC43300
Sample: S_1
SAMN16079392 • SRS7336538 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from planktonic cells using an RNA prep pure bacteria kit (Beijing Tiangen, Cat: #DP430) .Sequencing libraries were generated using the NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following the manufacturer's recommendations. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4771923
Links:
Runs: 1 run, 4.4M spots, 1.3G bases, 408.6Mb
Run# of Spots# of BasesSizePublished
SRR126071084,443,8011.3G408.6Mb2020-09-09

ID:
11812718

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